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<p>&nbsp;</p>
<p class="style1">Coding System for 3' UTR</p>
<p>We have three coding system for the locating interested region in 3' UTR. This coding system can be set by user by rearrange two parameters: start codon position and the last nucelotide for coding regions.The details is shown below. If the input file is in fata format. The user should compile the sequence as following. For fasta input, the first nucleotide is counted as 1. </p>
<p align="center">Table 1 Coding System used by MOOPS </p>
<table width="766" border="1">
  <tr>
    <td width="7">&nbsp;</td>
    <td width="42">Start Codon </td>
    <td width="49">Last Coding </td>
    <td width="346">Example</td>
    <td width="288">Description</td>
  </tr>
  <tr>
    <td height="56">1</td>
    <td>1</td>
    <td>x</td>
    <td>&gt;122939142|Moops|StartCodon|1|Cds_Length|1080<br>
    </td>
    <td>Counting from translation start codon(This is prefered by moops)</td>
  </tr>
  <tr>
    <td>2</td>
    <td>0</td>
    <td>0</td>
    <td>&gt;122939142|Moops|StartCodon|0|Cds_Length|0</td>
    <td>counting from the first 3' UTR nucleotide.This is a default coding system for fasta input. </td>
  </tr>
  <tr>
    <td>3</td>
    <td>x</td>
    <td>x</td>
    <td>&gt;122939142|Moops|StartCodon|389|Cds_Length|1080</td>
    <td>counting from transcription start point</td>
  </tr>
</table>
<p>* for FASTA file Only. The genbank file will adopt the type 1 coding system. </p>
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<p>Type 1:
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<p>Type 2:    </p>
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<p><a name="7"></a>Type 7: </p>
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